Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6053907 chr20:6086303 G/C 8.03E-7 490 30.97 28.87 31.77 KM Plot
PRAD rs6053908 chr20:6086772 C/T 8.03E-7 490 30.97 28.87 31.77 KM Plot
PRAD rs6053912 chr20:6092355 T/A 7.75E-6 493 31.23 29.05 31.77 KM Plot
PRAD rs6053913 chr20:6095127 A/C 7.78E-6 491 31.27 29.05 31.77 KM Plot
PRAD rs60635873 chr9:124282253 C/G 2.45E-6 480 30.87 31.37 24.27 KM Plot
PRAD rs60643760 chr3:14016633 C/T 0.000149 492 30.77 31.37 21.58 KM Plot
PRAD rs60661460 chr2:10478239 A/G 1.14E-13 478 30.33 33.37 10.03 KM Plot
PRAD rs60755093 chr2:178803446 G/A 4.21E-5 493 30.75 31.93 20.48 KM Plot
PRAD rs6076555 chr20:433118 C/T 7.32E-8 494 31.27 23.6 21.2 KM Plot
PRAD rs6076920 chr20:6029317 C/G 8.78E-5 494 30.8 31.33 29.17 KM Plot
PRAD rs609500 chr11:71563129 A/G 5.88E-5 493 31.27 28.57 20.93 KM Plot
PRAD rs6096026 chr20:36375397 C/G 0.000121 494 29.63 29.13 31.63 KM Plot
PRAD rs609801 chr1:112325513 A/C 0.000159 494 30.87 31.5 24.75 KM Plot
PRAD rs61019092 chr18:71953205 G/A 7.84E-5 487 31.27 28.23 23.07 KM Plot
PRAD rs6106185 chr20:2059311 C/G 3.04E-7 494 29.55 33.6 28.77 KM Plot